iñigo prada luengo | Replicative aging is associated with loss of genetic iñigo prada luengo Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
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2 · Sensitive detection of circular DNAs at single
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7 · Inigo Prada Luengo – Staff – University of Copenhagen
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2021. Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae. I Prada-Luengo, HD Møller, RA Henriksen, Q Gao, .
Iñigo PRADA-LUENGO | Cited by 462 | of University of Copenhagen, Copenhagen | Read 23 publications | Contact Iñigo PRADA-LUENGO.
Copenhagen, Capital Region, Denmark. Postdoc in Precision Medicine at the Department of Computer Science (DIKU) & The Center for Health Data Science (SUND). I am working on . Circle-Map is an easy-to-use command line tool that implements the required pipeline to accurately detect circular DNA from circle enriched next generation sequencing .View research profile and publications Employees in the research sections. Employees in the research sections. Algorithms and ComplexityInigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
Iñigo Prada
This enables control-free, single-sample differential expression analysis. In breast cancer, we demonstrate how our approach selects marker genes and outperforms a state-of .
Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø . In yeast, circular ribosomal DNA (rDNA) accumulates dramatically as cells age, however little is known about the accumulation of other chromosome-derived circles or the .
A method for variant graph genotyping based on exact alignment of k-mers. C++ 1. DCC Public. Forked from dieterich-lab/DCC. DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation . Iñigo Prada-Luengo 1 , Henrik D Møller 1 2 , Rasmus A Henriksen 1 , Qian Gao 3 4 , Camilla Eggert Larsen 1 , Sefa Alizadeh 1 , Lasse Maretty 5 , Jonathan Houseley 3 , Birgitte Regenberg 1 Affiliations 1 Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen DK-2100, Denmark. 2 .
iprada (Iñigo Prada
Iñigo Prada-Luengo, Anders Krogh & Birgitte Regenberg. Department of Computer Science, University of Copenhagen, Universitetsparken 1, DK-2100, København Ø, Denmark. Anders Krogh. Department of Molecular Medicine, Aarhus University, Palle Juul-Jensens Boulevard 99, DK-8200, Aarhus N, Denmark.
Henrik Devitt Møller 1 , Marghoob Mohiyuddin 2 , Iñigo Prada-Luengo 3 , M Reza Sailani 4 , Jens Frey Halling 3 , Peter Plomgaard 5 6 , Lasse Maretty 3 , Anders Johannes Hansen 7 , Michael P Snyder 4 , Henriette Pilegaard 3 , Hugo Y K Lam 2 , Birgitte Regenberg 8Henrik Devitt Møller1, Marghoob Mohiyuddin2, Iñigo Prada-Luengo 1, M. Reza Sailani3, Jens Frey Halling1, Peter Plomgaard 4,5 , Lasse Maretty 1 , Anders Johannes Hansen 6 , Michael P. Snyder 3 . Henrik Devitt Møller, 1 Marghoob Mohiyuddin, 2 Iñigo Prada-Luengo, 1 M. Reza Sailani, 3 Jens Frey Halling, 1 Peter Plomgaard, 4, 5 Lasse Maretty, 1 Anders Johannes Hansen, 6 Michael P. Snyder, 3 Henriette Pilegaard, 1 Hugo Y. K. Lam, 2 and Birgitte Regenberg 1 Henrik Devitt Møller, Iñigo Prada-Luengo, Jens Frey Halling, Lasse Maretty, Henriette Pilegaard & Birgitte Regenberg Roche Sequencing Solutions, Belmont, CA, 94002, USA Marghoob Mohiyuddin .
Sensitive detection of circular DNAs at single
Researchers hope to develop novel drugs for gastrointestinal disorders by fermenting feces Leire Iparraguirre 1 , Iñigo Prada-Luengo 2 , Birgitte Regenberg 2 , David Otaegui 1 Affiliations 1 Neurosciences Area, Biodonostia Health Research Institute, San Sebastián, Spain.
Iñigo Prada-Luengo, Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen DK-2100, Denmark. . Prada-Luengo I., Gilbert M.T.P., Regenberg B.. Near-Random distribution of chromosome-derived circular DNA in the condensed genome of pigeons and the larger, more repeat-rich human genome.Iñigo Prada‑Luengo1 . Prada‑Luengo et al. Genome Biology Page 3 of 17 In summary, our model of normal gene expression drastically improves dierential expression analysis by yielding fewer false positives and extending the analysis to sin-gle cancer samples (N-of .
Saverio D'Amico, Lorenzo Dall'Olio, Cesare Rollo, Patricia Alonso, Iñigo Prada-Luengo, Daniele Dall'Olio, Claudia Sala, Matteo Bersanelli, Elisabetta Sauta, Marilena Bicchieri, Pierandrea Morandini, Tobia Tommasini, Victor Savevski, Lin-Pierre Zhao, Uwe Platzbecker, Maria Diez-Campelo, Valeria Santini, Pierre Fenaux, Torsten Haferlach, Anders .
@InigoPrada (Iñigo Prada‑Luengo), @viki_schu (Viktoria Schuster). Funding. Open access funding provided by Royal Library, Copenhagen University Library AK is funded by two grants from the . Circular DNA has recently been identified across different species including human normal and cancerous tissue, but short-read mappers are unable to align many of the reads crossing circle junctions and hence limits their detection from short-read sequencing data. Here, we propose a new method, Circle-Map, that guides the realignment of partially aligned reads . Iñigo Prada-Luengo, 1 Anders Krogh, 1, 2 Lasse Maretty, # 3 and Birgitte Regenberg # 1 Iñigo Prada-Luengo 1 Department of Biology, University of Copenhagen, Ole Maaløes Vej 5, DK-2200 København N, Denmark2021. Replicative aging is associated with loss of genetic heterogeneity from extrachromosomal circular DNA in Saccharomyces cerevisiae. I Prada-Luengo, HD Møller, RA Henriksen, Q Gao, CE.
Iñigo PRADA-LUENGO | Cited by 462 | of University of Copenhagen, Copenhagen | Read 23 publications | Contact Iñigo PRADA-LUENGO.Copenhagen, Capital Region, Denmark. Postdoc in Precision Medicine at the Department of Computer Science (DIKU) & The Center for Health Data Science (SUND). I am working on Machine Learning. Circle-Map is an easy-to-use command line tool that implements the required pipeline to accurately detect circular DNA from circle enriched next generation sequencing experiments. Circle-Map is implemented in python3.6 and it is freely available at https://github.com/iprada/Circle-Map.View research profile and publications Employees in the research sections. Employees in the research sections. Algorithms and Complexity
Replicative aging is associated with loss of genetic
Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø . This enables control-free, single-sample differential expression analysis. In breast cancer, we demonstrate how our approach selects marker genes and outperforms a state-of-the-art method. Furthermore, significant genes identified by the model are enriched in driver genes across cancers.
Inigo Prada Luengo. Postdoc. Machine Learning. Universitetsparken 1. 2100 København Ø .
In yeast, circular ribosomal DNA (rDNA) accumulates dramatically as cells age, however little is known about the accumulation of other chromosome-derived circles or the contribution of such circles to genetic variation in aged cells.
Iñigo Prada Luengo
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iñigo prada luengo|Replicative aging is associated with loss of genetic
